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OKLAHOMA SUPERCOMPUTING SYMPOSIUM 2020



OSCER

OU IT, it.ou.edu

OK EPSCoR, okepscor.org


Table of Contents


PLENARY SPEAKERS

KEYNOTE SPEAKER
Amy Friedlander
Amy Friedlander

Deputy Office Director
Office of Advanced Cyberinfrastructure
National Science Foundation

Topic: "Innovation and Stability in the Research Cyberinfrastructure"

Talk Abstract

The central problem in technology-driven large-scale infrastructure systems is providing services that are predictable, reliable, and broadly accessible, without allowing them to become obsolete, stale, and under-resourced. For Cyberinfrastructure (CI), this problem is particularly acute, as the technologies themselves advance very rapidly, user demand and expectations escalate, and the cyberinfrastructure is itself dynamic. This talk provides an overview of programs in the Office of Advanced Cyberinfrastructure, (OAC) at the National Science Foundation, and explores ways OAC manages this tension between provisioning the national research CI and enabling innovation in the CI systems and services that nurture development of new capabilities to transform the next generation of scientific research.

Biography

Amy Friedlander is currently the Acting Office Director for the Office of Advanced Cyberinfrastructure, Directorate for Computer and Information Science and Engineering (CISE/OAC), where she has served as Acting Deputy Division Director and Deputy Office Director since November 2014. Since joining NSF in 2010, she has led several strategic activities, including both initial coordination of the Public Access Initiative and the activities that culminated in the widely-distributed report Rebuilding the Mosaic (2011). In addition to her position in OAC, Dr. Friedlander plays a central role in NSF's data management policies and activities that address the Foundation's administrative data as well as the research data resulting from NSF's investments.

Prior to her NSF appointment, Dr. Friedlander held positions in the private non-profit and for-profit sectors. Among other projects, she participated in the Blue Blue Ribbon Task Force on Sustainable Digital Preservation and Access, funded largely by NSF; led the initial strategic planning for the Library of Congress' National Digital Information Infrastructure and Preservation Program (NSIIPP); and served as editor-in-chief of the ACM Journal on Computing and Cultural Heritage. At the Corporation for National Research Initiatives (CNRI), she was the founding editor of D-Lib Magazine and the author of a series of studies of the historical development large-scale technology-intensive infrastructures in the U.S. Dr. Friedlander graduated from Vassar College, where she was elected to Phi Beta Kappa. She holds the M.A. and Ph.D. from Emory University and the M.S.L.I.S. from The Catholic University of America. She pursued postdoctoral work on quantitative methods and computer-assisted social science research at the Newberry Library in Chicago IL.

Susan Gregurick
Susan Gregurick

Director
Office of Data Science Strategy
Associate Director for Data Science
National Institutes of Health
Topic: "Enabling a FAIR Data Ecosystem"
Slides:     available after the Symposium

Talk Abstract

Coming soon

Biography

Susan K. Gregurick, Ph.D., was appointed Associate Director for Data Science and Director of the Office of Data Science Strategy (ODSS) at the National Institutes of Health on Sept. 16, 2019. Under Dr. Gregurick's leadership, the ODSS leads the implementation of the NIH Strategic Plan for Data Science through scientific, technical, and operational collaboration with the institutes, centers, and offices that comprise NIH. Dr. Gregurick was instrumental in the creation of the ODSS in 2018 and served as a senior advisor to the office until being named to her current position.

Dr. Gregurick was previously the Division Director for Biophysics, Biomedical Technology, and Computational Biosciences at the National Institute of General Medical Sciences. Prior to joining the NIH in 2013, Dr. Gregurick was a program director in the Office of Biological and Environmental Research at the Department of Energy.

Before beginning a career of government service, Dr. Gregurick was a professor of computational chemistry at the University of Maryland, Baltimore County. Her research interests included dynamics of large biological macromolecules, and her areas of expertise are computational biology, high performance computing, neutron scattering and bioinformatics.

Dr. Gregurick received her undergraduate degree in chemistry and mathematics from the University of Michigan and her Ph.D. in physical chemistry from the University of Maryland.

Thomas J. (Tom) Lange
Tom Lange

Technology Optimization & Management LLC
Sole member

Topic: "The Surprising Digital Past, Present & Future of Everyday Things"

Slides:   PowerPoint

Talk Abstract

The context and history of today's digital transformation that permeates everyday life through everyday products, has a parallel origin story that goes back to the early 1800's. The transitions from Water to Rail to Roads to Wires ... has spawned innovations and winners and also left losers who failed to adapt. Many Scientists and Engineers still see innovation as a cycle of Build, Fly, Crash, Fix, confined to the physical world. High Performance Computing has been with us in some form for 40+ years, and for many industries it is has become norm driving innovation. However, with 'low tech' goods (or so they seem), adoption of the latest technologies that Innovate HOW to innovate has continued to be a slog. We will cover many examples where there are some surprising successes — from the bathroom, to the laundry room and beyond.

Machine learning and 'big' data has now emerged as a source of data and a way to simplify the adoption of results from what were very expensive, technical and tedious calculations. Machine learning does not 'replace' HPC; it leverages it and can enhance its output. The digital age — and HPC in particular — has created whole new careers dedicated to our latest challenges, which are amazingly similar, but clearly different, to the ones we faced 40 years ago.

Biography

Tom Lange is a 36 year veteran of Procter & Gamble, where he founded and led P&G's organizational Modeling & Simulation (M&S) community. Before retiring as Director of M&S in 2015, Tom spent his professional career modeling and simulating formulations, products and production systems, using technology to span the scales from atoms to the store shelf.  Analysis and optimization contributed to projects on how hot air roasts peanuts and coffee, how Pringles 'fly', and how baby size affects diaper leaks.   This included the disciplines of Consumer Modeling, Computational Chemistry & Biology, CAE Computer Aided Engineering (Structures, Fluids, Controls, Chemical Engineering, Empirical), and Production System Throughput & Reliability.  

Tom now spends his professional time consulting with Public and Private enterprises on ways to improve their competitive edge through the use of the latest computing based modeling & simulation tools.

Henry Neeman
Henry Neeman

Assistant Vice President – Research Strategy Advisor
Information Technology
Director
OU Supercomputing Center for Education & Research (OSCER)
Information Technology
Associate Professor
College of Engineering
Adjunct Associate Professor
School of Computer Science
University of Oklahoma
Joint Co-manager (with Dana Brunson)
XSEDE Campus Engagement program

Topic: "OSCER State of the Center Address"

Slides:   PowerPoint   PDF

Talk Abstract

The OU Supercomputing Center for Education & Research (OSCER) celebrated its 19th anniversary on August 31 2020. In this report, we examine what OSCER is, what OSCER does, what OSCER has accomplished in its 19 years, and where OSCER is going.

Biography

Dr. Henry Neeman is the Director of the OU Supercomputing Center for Education & Research, Assistant Vice President Information Techology – Research Strategy Advisor, Associate Professor in the College of Engineering and Adjunct Associate Professor in the School of Computer Science at the University of Oklahoma. He and Dana Brunson are joint co-leads of the XSEDE Campus Engagement program, which includes the Campus Champions.

He received his BS in computer science and his BA in statistics with a minor in mathematics from the State University of New York at Buffalo in 1987, his MS in CS from the University of Illinois at Urbana-Champaign in 1990 and his PhD in CS from UIUC in 1996. Prior to coming to OU, Dr. Neeman was a postdoctoral research associate at the National Center for Supercomputing Applications at UIUC, and before that served as a graduate research assistant both at NCSA and at the Center for Supercomputing Research & Development.

In addition to his own teaching and research, Dr. Neeman has collaborated with dozens of research groups, applying High Performance Computing techniques in fields such as numerical weather prediction, bioinformatics and genomics, data mining, high energy physics, astronomy, nanotechnology, petroleum reservoir management, river basin modeling and engineering optimization. He serves as an ad hoc advisor to student researchers in many of these fields.

Dr. Neeman's research interests include high performance computing, scientific computing, parallel and distributed computing and computer science education.

Dan Stanzione
Dan Stanzione

Executive Director
Texas Advanced Computing Center
The University of Texas at Austin

Topic: "Frontera 2020: Urgent Computing and a Big Supercomputer in a Crazy Year"

Slides: available after the Symposium

Talk Abstract

This talk will discuss how supercomputers are used in the fight against a global pandemics, from molecular modeling to genomics to modeling how people interact from cell phone data. This will include the experiences from the first year of the Frontera system, which played a significant role in this fight. The talk will also cover the planning ongoing for the NSF Leadership Class Computing Facility, including the role "Urgent Computing" may play.

Biography

Dan Stanzione is the Executive Director of the Texas Advanced Computing Center (TACC) at The University of Texas at Austin and the Principal Investigator for Wrangler. He is also the PI for TACC's 10 PetaFlop Stampede supercomputer, and has previously been involved in the deployment and operation of the Ranger and Lonestar supercomputers at TACC. He served as the Co-Director of The iPlant Collaborative, an ambitious endeavor to build cyberinfrastructure to address the grand challenges of plant science. Prior to joining TACC, Dr. Stanzione was the founding director of the Ira A. Fulton High Performance Computing Institute (HPCI) at Arizona State University (ASU). Before ASU, he served as an AAAS Science Policy Fellow in the National Science Foundation and as a research professor at Clemson University, his alma mater.

John Shalf
John Shalf

Department Head for Computer Science
Lawrence Berkeley National Laboratory
Topic: "Pathfinding for Post-Exascale HPC"
Slides:     PDF

Talk Abstract

With the inevitable demise of Moore's Law, it will be challenging to obtain the time-to-solution goals for future IC computing requirements with conventional off-the-shelf CPU designs. The last decade of HPC has seen the growth of GPUs and accelerators, and the underlying philosophy is that in order to achieve the required speeds, we must develop include hardware accelerators tailored for science in addition to the general-purpose CPUs.  The mega-datacenter (Facebook, Microsoft Azure, Google, and Amazon) have deployed multiple strategies to introduce specialized hardware to continue performance growth for their datacenters in the absence of transistor scaling. The three strategies are application-specific acceleration (such as the Google TPU), heterogeneous acceleration within System-On-Chips (SOCs) (Amazon Graviton and Graviton2 and Apple's iPhone chips), and resource disaggregation (Google, Facebook).  The central question for us to consider is which of those strategies (or combination thereof) could be applied to serve the needs of scientific computing, and what would we need to change or augment to make these specialization strategies work for science.

Biography

John Shalf is Department Head for Computer Science and Data Sciences at Lawrence Berkeley National Laboratory, and recently was deputy director of Hardware Technology for the US Department of Energy's Exascale Computing Project. Shalf is a co-author of over 80 publications in the field of parallel computing software and HPC technology, including three best papers and the widely cited report "The Landscape of Parallel Computing Research: A View from Berkeley" (with David Patterson and others). He also co-authored the 2008 "ExaScale Software Study: Software Challenges in Extreme Scale Systems," which set the Defense Advanced Research Project Agency's (DARPA's) information technology research investment strategy. Prior to coming to Berkeley Laboratory, John worked at the National Center for Supercomputing Applications at the University of Illinois and the Max-Planck-Institut fuer Gravitationphysick/Albert Einstein Institut in Potsdam, Germany, where he was co-creator of the Cactus Computational Toolkit.


Pratul K. Agarwal
Pratul K. Agarwal

Professor of Physiological Sciences
Assistant Vice President for Research (CyberInfrastructure)
Director, OSU High Performance Computing Center
Oklahoma State University

Panel Topic:
"The OneOklahoma Cyberinfrastructure Initiative: Fostering a Culture of Cyberinfrastructure Grant Proposals"

Talk Abstract

Coming soon

Biography

Pratul K. Agarwal is the Assistant Vice President of Research for Cyber-Infrastructure and is also the Director of the OSU High-Performance Computing Center He has over 15 years of experience in high performance computing and scientific research. He previously held positions at University of Tennessee Knoxville and Oak Ridge National Laboratory. He currently serves on Editorial Board of the journal Microbial Microbial Cell Factories, and is an Academic Editor for PLoS ONE. He has served on a number of national and international scientific review panels for US (NSF/NIH/EPA/DARPA), Swiss, Italian, and Polish government agencies. He has published over 65 papers in peer-reviewed journals (including Proceedings of the National Academy of Sciences, Angewandte Chemie, PLoS Biology, Accounts of Chemical Research, Journal of the American Chemical Society, Biochemistry, IEEE Computer, Concurrency and Computations: Practice and Experience, and Proceedings of the IEEE International Conferences on High-Performance Computing, Data, and Analytics. He holds 3 patents and 4 patent applications pending.

His research interests are a combination of topics that span the domains of biology, chemistry, data informatics, and high performance computing. His group develops and uses data analysis techniques, theoretical methods along with large-scale computer simulations to investigate biomolecules. He closely work with experimental collaborators for development and validation of the computational models. He is particularly interested in solving problems that have implications for clean energy, environment and health.

Brian Burkhart
Brian Burkhart

Senior Director of Network Systems
OneNet

Panel Topic: "The OneOklahoma Cyberinfrastructure Initiative: Fostering a Culture of Cyberinfrastructure Grant Proposals"

Panel Abstract:

Coming soon

Biography

Brian Burkhart joined the OneNet team in November 1999 as a systems engineer. He currently serves as senior director of network systems and manages the OneNet team members who deliver "above-the-net" services such as web, email, DNS, virtual infrastructure, application hosting and video conferencing. 

Brian also engages with the research community in Oklahoma and the region to ensure OneNet services and support are well-matched to the needs of researchers. Brian is a co-PI on the SI-MORe-OFFN grant, which is bringing dedicated research connectivity and network equipment to five additional institutions in Oklahoma.

James Deaton
James Deaton

Executive Director
Great Plains Network

Panel Topic:
"The OneOklahoma Cyberinfrastructure Initiative: Fostering a Culture of Cyberinfrastructure Grant Proposals"

Panel Abstract

Coming soon

Biography

James Deaton is Executive Director of the Great Plains Network. Deaton serves on the board of the Quilt (National Consortium of Research Networks), is Chair of Internet2's Network Architecture, Operations and Policy Program Advisory Group, and is proud to be involved in a number of regional research computing and data projects, such as the Great Plains CyberTeam and Great Plains ARGO projects. Deaton's involvement with the OneOklahoma Cyberinfrastructure Initiative (OneOCII) has facilitated a number of successful programs leveraging state networking facilities to serve the needs of researchers and faculty at numerous institutions in the region.

He previously served as Chief Technology Officer for OneNet, Oklahoma's statewide research and education network. In this capacity, he was a key decision-maker in terms of technology oversight, engineering and long-term research and development. In addition to his responsibilities at OneNet, Deaton was accountable for maintaining close involvement with researchers and engineers of state, regional and national network initiatives.

Jeremy Evert
Jeremy Evert

Associate Professor of Computer Science
Department of Business & Computer Science
Southwestern Oklahoma State University

Panel Topic:
"The OneOklahoma Cyberinfrastructure Initiative: Fostering a Culture of Cyberinfrastructure Grant Proposals"

Abstract

Coming soon

Biography

Dr. Jeremy Evert is an assistant professor for the Department of Business & Computer Science at Southwestern Oklahoma State University. Jeremy teaches introductory programming and source code management. He works closely with his students on undergraduate research projects. Jeremy has been successful in securing funding for equipment and student travel from Oklahoma NASA EPSCoR and the National Science Foundation. Jeremy has been a mentor for a Blue Waters Student Intern, and has also coached teams for the 2020 and 2020 Oklahoma High Performance Computing Competition. Jeremy was selected by the SWOSU students as the 2020 Faculty of the Year.

James W. Ferguson
James Ferguson

Research Computing Facilitator
OU Supercomputing Center for Education & Research
University of Oklahoma

Panel Topic:
"The OneOklahoma Cyberinfrastructure Initiative: Fostering a Culture of Cyberinfrastructure Grant Proposals"

Panel Abstract

Coming soon

Biography

Jim Ferguson is a Research Computing Facilitator for OU Supercomputing Center for Education & Research (OSCER) at the University of Oklahoma. Jim works directly with users of OSCER through direct consultation and mini-workshops fashioned to fit in to busy schedules. He is a certified Carpentries instructor and instructs at workshops organized through OU Libraries. Jim also works for the Great Plains Cyberteam project, an NSF-funded effort, along with other colleagues from several Great Plains Network affiliated Universities.

Before coming to OSCER, Jim served as the Director of Education, Outreach & Training for the National Institute for Computational Sciences (NICS) at the University of Tennessee Knoxville. Before joining NICS, Jim's focus was programming for, training, and educating users of high performance computers and networks. Jim's previous experience includes positions at Pratt & Whitney Aircraft and the National Center for Supercomputing Applications, including significant roles in NSF-funded projects like the National Laboratory for Applied Network Research and Web100. Jim is an alumnus of Rose-Hulman Institute of Technology.

Franklin Fondjo Fotou, Dr. Eng.
Franklin Fondjo Fotou

Associate Professor
Department Chair
Department of Technology
School of Arts and Sciences
Langston University

Panel Topic: "The OneOklahoma Cyberinfrastructure Initiative: Fostering a Culture of Cyberinfrastructure Grant Proposals"

Panel Abstract

Coming soon

Biography

Franklin Fondjo Fotou received his B.S. degree in Physics, M.Sc. degrees in Physics (with a minor in Electronics), M.Sc. Degree in Physics (with a minor in Heat Transfer) from the University of Yaoundé I, Yaoundé Cameroon, in 1996, 1998, and 2000 respectively. He received the Doctor's degree in Computer Science and Communication Engineering at the Graduate School of Information Science and Electrical Engineering, Kyushu University, Japan in March 2006. Dr. Fondjo was recipient of the Japanese government scholarship for excellence, the Munbukagakusho, from April 2003 - March 2006, and has received several the Young Scientist Research Fund of the 21st Century COE Program of Japan in 2004, 2005 and 2006. He is Co-PI and key personnel on several NSF funded grants. His current research includes Computational Electromagnetics and SAR, Internet of Thing (IoT), and big Data analysis and Data Science. He is currently the Chair of the Department of Technology, Langston University, in Langston OK. The Co-Director of the Langston Computing Center for Research and Education (LU-CCRE), the Director of the Langston Center for Interdisciplinary Research and Education (LU-CIRE), and the Co-Director of the Langston Math Science and Technology (MST) Summer Program at Langston University. Dr. Fondjo Fotou is an XSEDE Campus Champion for Langston University and an active member of the OneOklahoma Cyberinfrastructure Initiative (OneOCII). He served as member of the Student Engagement program for XSEDE 16. He is also member of both the IEEE (Institute of Electrical and Electronics Engineers) in US and the IEICE (The Institute of Electronics, Information and Communication Engineers) in Japan.

Karl Frinkle
Karl Frinkle and Mike Morris

Professor
Department of Mathematics
Southeastern Oklahoma State University

Panel Topic:
"The OneOklahoma Cyberinfrastructure Initiative: Fostering a Culture of Cyberinfrastructure Grant Proposals"

Abstract

Coming soon

Biography

Karl Frinkle is an applied mathematician who earned his PhD from the University of New Mexico. He is deeply interested in numerical simulations, and most recently in parallel programming. Karl joined the SE Mathematics department in 2005, and thoroughly enjoys teaching parallel programming courses with Mike Morris through the CS department.

Peter J. Hawrylak
Peter Hawrylak

Associate Professor
Tandy School of Computer Science
Associate Professor
Department of Electrical and Computer Engineering
The University of Tulsa

Panel Topic: "The OneOklahoma Cyberinfrastructure Initiative: Fostering a Culture of Cyberinfrastructure Grant Proposals"

Panel Abstract

Coming soon

Biography

Peter J. Hawrylak, Ph.D. (M'05-SM'17) received the B.S. degree in Computer Engineering, the M.S. degree in Electrical Engineering, and the Ph.D. in Electrical Engineering from the University of Pittsburgh, in 2002, 2004, and 2006, respectively. He is an Associate Professor in the Department of Electrical and Computer Engineering, with a joint appointment in the Tandy School of Computer Science, at The University of Tulsa. He has published more than 60 publications and holds 16 patents in the radio frequency identification (RFID) and energy harvesting areas. His research interests include RFID, security for low-power wireless devices, Internet of Things applications, and digital design. Dr. Hawrylak is a member of the IEEE and IEEE Computer Society, and is currently the Chair of the Tulsa Section of the IEEE. He served as chair of the RFID Experts Group (REG) of the Association for Automatic Identification and Mobility (AIM) in 2012-2013. Peter received AIM Inc.'s Ted Williams Award in 2020 for his contributions to the RFID industry. Dr. Hawrylak is the Publication Chair of the International IEEE RFID Conference, served as the Editor-in-Chief of the IEEE RFID Virtual Journal from 2016-2019, and is the Editor-in-Chief of the International Journal of Radio Frequency Identification Technology and Applications (IJRFITA) published by InderScience Publishers, which focuses on the application and development of RFID technology.

Evan Lemley
Evan Lemley

Professor
Department of Engineering & Physics
University of Central Oklahoma

Panel Topic:
"The OneOklahoma Cyberinfrastructure Initiative: Fostering a Culture of Cyberinfrastructure Grant Proposals"

Panel Abstract

Coming soon

Biography

Evan Lemley received his BA in Physics from Hendrix College and MS and Ph.D in Engineering (Mechanical) from the University of Arkansas. His thesis work was focused on modeling and simulation of various neutron detectors. Post graduation Evan worked for the engineering consulting firm Black & Veatch in a group responsible for modeling coal power plants with custom written software.

In August 1998, Evan became an Assistant Professor in the Department of Engineering and Physics (formerly Physics) at the University of Central Oklahoma, and has been there since, teaching mechanical engineering, physics, and engineering computation courses. Early research at UCO was focused on neutron transport in materials. More recently, Evan has been involved in simulation of flow in microtubes and microjunctions and simulation of flow in porous networks.

Stephen Wheat
Stephen Wheat

Department of Computing and Mathematics
Oral Roberts University

Panel Topic:
"The OneOklahoma Cyberinfrastructure Initiative: Fostering a Culture of Cyberinfrastructure Grant Proposals"

Slides: available after the Symposium

Talk Abstract

Coming soon

Biography

Stephen Wheat joined the Computing and Mathematics faculty at Oral Roberts University in January, 2018. As a Professor of Computer Science, he carries a full course load, manages senior projects, and drives several HPC/AI-oriented research projects. He is also Director of ORU's HPC Center. Prior to his arrival at ORU, he spent 38 years in the High-Performance Computing (HPC) industry. His work contributed to the search for oil, the enhancement of telephony, the hunting for submarines, the means to comply with the Intermediate-Range Nuclear Forces Treaty, the means to maintain the nuclear stockpile without the need for full-scale testing, to advancements in all industries. His roles spanned from researcher to General Manager.

Dr. Wheat is the recipient of a Gordon Bell Prize (1994) as well as the Intel Achievement Award (1997), both associated with his advancing the technology in HPC. He has twice been recognized by HPCwire as one of their "People to Watch". He was recognized as one of NASA Ames 25 most influential people in their 25-year history for his contributions to NASA's return to flight post the Columbia space shuttle disaster, even though he did not work for NASA.


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